STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usp4Ubiquitin carboxyl-terminal hydrolase 4; Belongs to the peptidase C19 family. (1543 aa)    
Predicted Functional Partners:
UBA52-4
Ubiquitin-60S ribosomal protein L40.
    
  0.636
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.635
hif-1
Hypoxia-inducible factor 1.
    
 0.619
RFC5
Replication factor C subunit 5.
    
 0.600
Rfc4
Replication factor C subunit 4.
   
 0.598
RFC2
Replication factor C subunit 2.
    
 0.596
POLH
DNA polymerase eta.
   
 
 0.595
yars
Tyrosine--tRNA ligase.
   
  
 0.592
RFC3
Replication factor C subunit 3.
    
  0.590
RFC1
Replication factor C subunit 1.
   
 
  0.589
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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