STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubc-17Putative ubiquitin-conjugating enzyme protein 17. (700 aa)    
Predicted Functional Partners:
TRIP12
E3 ubiquitin-protein ligase TRIP12.
   
 0.861
UBA1
Ubiquitin-like modifier-activating enzyme 1; Belongs to the ubiquitin-activating E1 family.
 
 0.853
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.776
Ube2g1
Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family.
   
 
0.774
Ube2h
Ubiquitin-conjugating enzyme E2 H.
   
 0.767
Necap1
Ubiquitin-conjugating enzyme E2 J2.
   
0.758
UBE2J1
Ubiquitin-conjugating enzyme E2 J1.
     
0.749
T01_9585
Uncharacterized protein.
   
 
 0.726
KDM6A
Lysine-specific demethylase 6A.
   
 0.722
Uba3
Tyrosine--tRNA ligase.
   
 0.697
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.