STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sf3a1Splicing factor 3A subunit 1. (1031 aa)    
Predicted Functional Partners:
SF3A3
Splicing factor 3A subunit 3.
   
 0.989
Sf3a2
Splicing factor 3A subunit 2.
   
 0.985
SF3B2
Splicing factor 3B subunit 2.
   
 0.983
sf3b1
Splicing factor 3B subunit 1.
   
 0.982
DDX46
Putative ATP-dependent RNA helicase DDX46.
   
 0.982
SF3B3
Splicing factor 3B subunit 3.
   
 0.982
sap-49
Splicing factor 3B subunit 4.
   
 0.981
Snrpa1
U2 small nuclear ribonucleoprotein A.
   
 0.977
T01_3244
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.965
T01_603
PHD finger-like domain-containing protein 5B.
   
 0.961
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.