STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ire-1Serine/threonine-protein kinase/endoribonuclease ire-1. (855 aa)    
Predicted Functional Partners:
Abce1
ATP-binding cassette sub-family E member 1.
   
 0.717
unc-89-2
Muscle M-line assembly protein unc-89.
   
 0.656
unc-89-3
Muscle M-line assembly protein unc-89.
   
 0.656
SEC63
Translocation protein SEC63-like protein.
    
 
 0.627
kay
Transcription factor kayak.
   
 0.621
XBP1
X-box-binding protein 1.
    
 0.597
TONSL
Tonsoku-like protein.
   
 0.527
CANX
Calnexin.
    
 
 0.505
hyou1
Hypoxia up-regulated protein 1.
  
 0.501
MAP2K1
Dual specificity mitogen-activated protein kinase-like kinase; Belongs to the protein kinase superfamily.
    
0.492
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.