STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIDT1SID1 transmembrane family member 1. (814 aa)    
Predicted Functional Partners:
LEO1
RNA polymerase-associated protein LEO1.
    
 0.804
Ssrp1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
 
  
 0.793
Polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.682
Supt5h
Transcription elongation factor SPT5.
   
 0.680
Polr2g
DNA-directed RNA polymerase II subunit RPB7.
   
 0.662
rpb-10
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
 0.661
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.661
POLR2K
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
 0.661
Rpb4
DNA-directed RNA polymerase II 16 kDa polypeptide.
    
 0.660
Polr2j
DNA-directed RNA polymerase II subunit RPB11.
    
 0.658
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.