STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T01_2066Sel1 repeat-containing protein 1-like protein. (229 aa)    
Predicted Functional Partners:
Os9
Protein OS-9.
   
 0.829
cup-2
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.634
DERL2
Derlin-2.
   
 0.634
TACO1
Translational activator of cytochrome c oxidase 1.
     
 0.558
TACC2-2
50S ribosomal protein L20.
  
  
 0.556
tin-10
Mitochondrial import inner membrane translocase subunit Tim10.
      
 0.510
faf2-b
FAS-associated factor 2-B.
   
 
 0.500
CHS3
Chitin synthase 3.
  
 0.440
COX6B-2
Cytochrome c oxidase subunit 6b-2.
   
 
 0.420
mgme1
Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance; Belongs to the MGME1 family.
      
 0.416
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.