IGBP1 protein (Trichinella spiralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

IGBP1

Immunoglobulin-binding protein 1. (344 aa)

Predicted Functional Partners:

PPP2CB

0.956

ppp4cb

0.897

Ppx1

0.840

tiprl

0.778

Cct6a

0.726

Tcerg1

0.717

PPP2R4

0.717

LCMT1

0.587

PPP2R1A

0.578

mlst8

0.561

Your Current Organism:

Trichinella spiralis

NCBI taxonomy Id: 6334
Other names: T. spiralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cct6a	IGBP1	A0A0V1AUY7	A0A0V1B5J2	T-complex protein 1 subunit zeta.	Immunoglobulin-binding protein 1.	0.726
Cct6a	PPP2CB	A0A0V1AUY7	A0A0V1BNC9	T-complex protein 1 subunit zeta.	Serine/threonine-protein phosphatase.	0.590
Cct6a	Tcerg1	A0A0V1AUY7	A0A0V1BN94	T-complex protein 1 subunit zeta.	T-complex protein 1 subunit eta.	0.995
IGBP1	Cct6a	A0A0V1B5J2	A0A0V1AUY7	Immunoglobulin-binding protein 1.	T-complex protein 1 subunit zeta.	0.726
IGBP1	LCMT1	A0A0V1B5J2	E5SLZ8	Immunoglobulin-binding protein 1.	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	0.587
IGBP1	PPP2CB	A0A0V1B5J2	A0A0V1BNC9	Immunoglobulin-binding protein 1.	Serine/threonine-protein phosphatase.	0.956
IGBP1	PPP2R1A	A0A0V1B5J2	A0A0V1B4A3	Immunoglobulin-binding protein 1.	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform.	0.578
IGBP1	PPP2R4	A0A0V1B5J2	A0A0V1BSL5	Immunoglobulin-binding protein 1.	Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	0.717
IGBP1	Ppx1	A0A0V1B5J2	A0A0V1B214	Immunoglobulin-binding protein 1.	Serine/threonine-protein phosphatase.	0.840
IGBP1	Tcerg1	A0A0V1B5J2	A0A0V1BN94	Immunoglobulin-binding protein 1.	T-complex protein 1 subunit eta.	0.717
IGBP1	mlst8	A0A0V1B5J2	A0A0V1BR83	Immunoglobulin-binding protein 1.	Target of rapamycin complex subunit lst8.	0.561
IGBP1	ppp4cb	A0A0V1B5J2	A0A0V1BR72	Immunoglobulin-binding protein 1.	Serine/threonine-protein phosphatase.	0.897
IGBP1	tiprl	A0A0V1B5J2	A0A0V1AW35	Immunoglobulin-binding protein 1.	TIP41-like protein.	0.778
LCMT1	IGBP1	E5SLZ8	A0A0V1B5J2	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	Immunoglobulin-binding protein 1.	0.587
LCMT1	PPP2CB	E5SLZ8	A0A0V1BNC9	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	Serine/threonine-protein phosphatase.	0.949
LCMT1	PPP2R1A	E5SLZ8	A0A0V1B4A3	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform.	0.779
LCMT1	PPP2R4	E5SLZ8	A0A0V1BSL5	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	0.719
LCMT1	Ppx1	E5SLZ8	A0A0V1B214	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	Serine/threonine-protein phosphatase.	0.634
LCMT1	ppp4cb	E5SLZ8	A0A0V1BR72	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	Serine/threonine-protein phosphatase.	0.651
LCMT1	tiprl	E5SLZ8	A0A0V1AW35	Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.	TIP41-like protein.	0.414