STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACTL6AActin-like protein 6A; Belongs to the actin family. (437 aa)    
Predicted Functional Partners:
smarcb1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.
   
 0.939
RUVBL1
DNA helicase; Belongs to the RuvB family.
   
 0.936
Smarcc2
SWI/SNF complex subunit SMARCC2.
    
 0.928
Smarca2
Putative global transcription activator SNF2L2.
   
 0.927
ruvbl2
RuvB-like helicase; Belongs to the RuvB family.
   
 0.900
DMAP1
DNA methyltransferase 1-associated protein 1.
   
 0.879
Epc1
Enhancer of polycomb-like protein 1.
    
 0.869
Nipped-A
Transcription-associated protein 1; Belongs to the PI3/PI4-kinase family.
    
 0.867
SMARCD1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1.
   
 0.865
meaf6
Chromatin modification-related protein MEAF6.
    
 0.826
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.