sws protein (Trichinella spiralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sws

Neuropathy target esterase sws. (1840 aa)

Predicted Functional Partners:

Pka-C1

0.644

PRKACA

0.644

PRKACA-2

0.644

NDUFS1

0.587

FA2H

0.571

Akap10

0.562

T01_8714

0.534

Fdxr

0.528

CUL4A

0.508

alh-13

0.480

Your Current Organism:

Trichinella spiralis

NCBI taxonomy Id: 6334
Other names: T. spiralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Akap10	PRKACA	A0A0V1BZD6	A0A0V1BGF5	A-kinase anchor protein 10, mitochondrial.	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	0.573
Akap10	PRKACA-2	A0A0V1BZD6	A0A0V1BGY6	A-kinase anchor protein 10, mitochondrial.	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	0.573
Akap10	Pka-C1	A0A0V1BZD6	A0A0V1BFW6	A-kinase anchor protein 10, mitochondrial.	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	0.573
Akap10	sws	A0A0V1BZD6	A0A0V1B8P1	A-kinase anchor protein 10, mitochondrial.	Neuropathy target esterase sws.	0.562
CUL4A	sws	A0A0V1BQU7	A0A0V1B8P1	Cullin-4A; Belongs to the G-protein coupled receptor Fz/Smo family.	Neuropathy target esterase sws.	0.508
FA2H	Fdxr	A0A0V1BE58	E5S5A5	Fatty acid 2-hydroxylase; Belongs to the sterol desaturase family.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.508
FA2H	alh-13	A0A0V1BE58	A0A0V1AZ91	Fatty acid 2-hydroxylase; Belongs to the sterol desaturase family.	Putative delta-1-pyrroline-5-carboxylate synthase.	0.590
FA2H	sws	A0A0V1BE58	A0A0V1B8P1	Fatty acid 2-hydroxylase; Belongs to the sterol desaturase family.	Neuropathy target esterase sws.	0.571
Fdxr	FA2H	E5S5A5	A0A0V1BE58	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Fatty acid 2-hydroxylase; Belongs to the sterol desaturase family.	0.508
Fdxr	T01_8714	E5S5A5	A0A0V1C1N1	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Glutamate synthase [NADH], amyloplastic.	0.995
Fdxr	alh-13	E5S5A5	A0A0V1AZ91	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Putative delta-1-pyrroline-5-carboxylate synthase.	0.891
Fdxr	sws	E5S5A5	A0A0V1B8P1	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Neuropathy target esterase sws.	0.528
NDUFS1	sws	A0A0V1AY61	A0A0V1B8P1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial; Belongs to the complex I 75 kDa subunit family.	Neuropathy target esterase sws.	0.587
PRKACA	Akap10	A0A0V1BGF5	A0A0V1BZD6	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	A-kinase anchor protein 10, mitochondrial.	0.573
PRKACA	sws	A0A0V1BGF5	A0A0V1B8P1	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	Neuropathy target esterase sws.	0.644
PRKACA-2	Akap10	A0A0V1BGY6	A0A0V1BZD6	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	A-kinase anchor protein 10, mitochondrial.	0.573
PRKACA-2	Pka-C1	A0A0V1BGY6	A0A0V1BFW6	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	0.904
PRKACA-2	sws	A0A0V1BGY6	A0A0V1B8P1	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	Neuropathy target esterase sws.	0.644
Pka-C1	Akap10	A0A0V1BFW6	A0A0V1BZD6	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	A-kinase anchor protein 10, mitochondrial.	0.573
Pka-C1	PRKACA-2	A0A0V1BFW6	A0A0V1BGY6	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase catalytic subunit alpha; Belongs to the protein kinase superfamily.	0.904