STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arfrp1ADP-ribosylation factor-related protein 1. (277 aa)    
Predicted Functional Partners:
COG8
Conserved oligomeric Golgi complex subunit 8.
   
 0.808
Rab6a
Ras-related protein Rab-6A.
    
 0.773
R06F6.8
Protein RIC1-like protein.
    
 0.751
Cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.741
BPI-2
Bactericidal permeability-increasing protein.
   
 
 0.730
Sys1
Protein SYS1-like protein.
   
 
 0.730
VPS53
Vacuolar protein sorting-associated protein 53-like protein.
     
 0.724
VPS52
Vacuolar protein sorting-associated protein 52-like protein.
   
 0.660
Stx16
Syntaxin-16.
    
 0.652
PDE6D
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta.
     
 0.651
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.