STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
inpp5fPhosphatidylinositide phosphatase SAC2. (1200 aa)    
Predicted Functional Partners:
Ocrl
Inositol polyphosphate 5-phosphatase OCRL-1.
     
 0.902
Mtmr6
Myotubularin-related protein 6.
     
 0.902
pten
Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase PTEN.
   
 
  0.902
MTMR2
Myotubularin-related protein 2.
     
 0.901
Pip5k1a
Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha.
     
 0.901
INPP5E
72 kDa inositol polyphosphate 5-phosphatase.
     
 0.901
PIKFYVE
1-phosphatidylinositol 3-phosphate 5-kinase.
     
  0.900
pi4k2b-3
Phosphatidylinositol 4-kinase type 2-beta.
     
  0.900
Plcg1
Phosphoinositide phospholipase C.
     
 0.900
pi4kb
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
     
  0.900
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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