STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fam63aProtein FAM63A. (1107 aa)    
Predicted Functional Partners:
UBA52-4
Ubiquitin-60S ribosomal protein L40.
   
   0.745
SETD3
Histone-lysine N-methyltransferase setd3.
    
 0.691
MUT
Methylmalonyl-CoA mutase, mitochondrial.
    
 0.691
MMAB
Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
      
 0.547
UBA52
Ubiquitin-60S ribosomal protein L40.
   
   0.449
UBA52-2
Ubiquitin-60S ribosomal protein L40.
   
   0.449
T01_4213
Ubiquitin.
   
   0.449
ltn1
E3 ubiquitin-protein ligase listerin.
   
  
 0.430
Usp7
Ubiquitin carboxyl-terminal hydrolase 7.
   
  
 0.429
MCEE
Methylmalonyl-CoA epimerase, mitochondrial.
   
  
 0.412
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.