STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SART3Squamous cell carcinoma antigen recognized by T-cells 3. (1251 aa)    
Predicted Functional Partners:
NAA38
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 
 0.959
Lsm4
U6 snRNA-associated Sm-like protein LSm4.
    
 
 0.945
Lsm6
U6 snRNA-associated Sm-like protein LSm6.
    
 
 0.943
Lsm3
U6 snRNA-associated Sm-like protein LSm3.
    
 
 0.813
T01_12287
Uncharacterized protein.
    
 
 0.813
prpf18
Pre-mRNA-splicing factor 18.
 
    
 0.790
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 
 0.746
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 
 0.740
PRPF4
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
   
 
 0.719
MEPCE
7SK snRNA methylphosphate capping enzyme.
    
 
 0.656
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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