STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG16L1Autophagy-related protein 16-1. (784 aa)    
Predicted Functional Partners:
atg3
Autophagy-related protein 3.
   
 0.995
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.986
Tmem33
Ras-related protein Rab-33.
    
 0.977
wipi2
WD repeat domain phosphoinositide-interacting protein 2.
   
 0.972
Atg6
Beclin-1.
    
 0.848
unc-51
Serine/threonine-protein kinase unc-51.
    
 
 0.847
lgg-1
Protein lgg-1.
    
 0.840
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.
    
 0.825
PIK3R4
Phosphoinositide 3-kinase regulatory subunit 4.
     
 0.821
T01_2030
Uncharacterized protein.
     
 0.803
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.