STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y54G11A.11Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (114 aa)    
Predicted Functional Partners:
Supt5h
Transcription elongation factor SPT5.
    
 
 0.937
Polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.851
LEO1
RNA polymerase-associated protein LEO1.
   
   0.808
Rpb4
DNA-directed RNA polymerase II 16 kDa polypeptide.
   
   0.807
IWS1
Protein IWS1-like protein.
    
 
 0.804
Polr2j
DNA-directed RNA polymerase II subunit RPB11.
   
   0.798
rpb-10
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
   0.777
rpb-8
Putative DNA-directed RNA polymerases I, II, and III subunit RPABC3.
    
   0.771
Polr2g
DNA-directed RNA polymerase II subunit RPB7.
    
   0.771
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
   0.766
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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