STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mog-4Putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4. (1034 aa)    
Predicted Functional Partners:
gpkow
G patch domain and KOW motifs-containing protein.
   
 0.976
Cdc40
Pre-mRNA-processing factor 17.
   
 0.966
cwc22
Pre-mRNA-splicing factor CWC22-like protein.
   
 0.949
Snrnp200
U5 small nuclear ribonucleoprotein helicase.
   
 
 0.948
CDC5L
Cell division cycle 5-like protein.
 
 
 0.948
XAB2
Pre-mRNA-splicing factor SYF1.
   
 0.941
THOC2
THO complex subunit 2.
   
 0.940
SF3B2
Splicing factor 3B subunit 2.
   
 0.940
Sf3a1
Splicing factor 3A subunit 1.
   
 0.927
SF3B3
Splicing factor 3B subunit 3.
   
 0.927
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.