STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sphk-1Sphingosine kinase 1. (402 aa)    
Predicted Functional Partners:
ASAH1
Acid ceramidase; Belongs to the acid ceramidase family.
     
 0.955
ttm-5
Putative sphingolipid delta(4)-desaturase/C4-hydroxylase; Belongs to the fatty acid desaturase type 1 family. DEGS subfamily.
    
 0.949
TM9SF3
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
     
  0.900
ned-8
Nedd8.
     
  0.900
SGPL1
Sphingosine-1-phosphate lyase 1.
 
 0.805
gspd-1
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis.
    
 0.649
FA2H
Fatty acid 2-hydroxylase; Belongs to the sterol desaturase family.
    
 
 0.634
Cct6a
T-complex protein 1 subunit zeta.
    
  0.627
cct-4
T-complex protein 1 subunit delta.
    
  0.627
Cct3
T-complex protein 1 subunit gamma.
    
  0.627
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.