STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZBED5-17Zinc finger BED domain-containing protein 5. (339 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
    
 0.763
KRBA2-2
KRAB-A domain-containing protein 2.
 
  
  0.697
ZBED5-8
Zinc finger BED domain-containing protein 5.
  
     0.528
SCAND3-6
SCAN domain-containing protein 3.
  
 
  0.513
SCAND3-20
SCAN domain-containing protein 3.
 
     0.478
Med14
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.473
ZBED5-6
Zinc finger BED domain-containing protein 5.
 
 
 0.464
KPNA3
Importin subunit alpha-4.
    
 0.457
SCAND3-8
SCAN domain-containing protein 3.
 
 
  0.455
SCAND3-11
SCAN domain-containing protein 3.
 
 
  0.449
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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