STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoipRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)    
Predicted Functional Partners:
K07C5.4
Nucleolar protein 56.
   
 0.996
NOP58
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
   
 0.995
fbl
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.993
rps30a
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.992
UTP15
U3 small nucleolar RNA-associated protein 15-like protein.
   
 0.992
Rrp9
U3 small nucleolar RNA-interacting protein 2.
   
 0.988
RPS6
40S ribosomal protein S6.
  
 0.987
RPS23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 0.984
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 0.982
Rps11
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
  
 0.981
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.