STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TOPP9Serine/threonine-protein phosphatase. (330 aa)    
Predicted Functional Partners:
WDR33
Pre-mRNA 3' end processing protein WDR33.
   
 0.891
Wdr82
WD repeat-containing protein 82-A.
   
 0.875
wdr82
WD repeat-containing protein 82.
   
 0.875
WDR82
WD repeat-containing protein 82.
   
 0.875
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.803
Clp
Cleavage and polyadenylation specificity factor subunit 4.
    
 0.776
Fip1l1
Pre-mRNA 3'-end-processing factor FIP1.
   
 0.771
osm1
Putative fumarate reductase.
   
 
  0.651
PPP2R2D
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
   
 0.610
Ppp1r16a
Protein phosphatase 1 regulatory subunit 16A.
   
 0.601
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.