STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XRN15'-3' exoribonuclease 1; Belongs to the universal ribosomal protein uL11 family. (2851 aa)    
Predicted Functional Partners:
Dcp1a
mRNA-decapping enzyme 1A.
    
 0.979
Dcp2
M7GpppN-mRNA hydrolase.
   
 0.959
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.948
T01_3460
Uncharacterized protein.
    
 0.944
Nop60B
H/ACA ribonucleoprotein complex subunit 4.
    
 
 0.877
SKIV2L
Helicase SKI2W.
   
 
 0.866
Lsm3
U6 snRNA-associated Sm-like protein LSm3.
    
 0.847
T01_12287
Uncharacterized protein.
    
 0.847
rps30a
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.834
Gnb2l1
Guanine nucleotide-binding protein subunit beta-2-like 1.
    
 
 0.823
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.