STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cup-4Acetylcholine receptor-like protein cup-4; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (537 aa)    
Predicted Functional Partners:
lgc-50-4
Ligand-gated ion channel 50; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
  
 0.514
lgc-50-3
Ligand-gated ion channel 50; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
    0.507
GluClalpha-2
Glutamate-gated chloride channel; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
    0.502
T01_1381
Glutamate-gated chloride channel subunit beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
    0.501
exp-1
Gamma-aminobutyric acid receptor exp-1; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
 
 0.485
GluClalpha
Glutamate-gated chloride channel; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
    0.476
lgc-50-5
Ligand-gated ion channel 50; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
  
 0.462
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.