STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sconC-2E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family. (105 aa)    
Predicted Functional Partners:
Stk16
Cullin-1; Belongs to the cullin family.
   
 0.940
Tbl1xr1
F-box-like/WD repeat-containing protein TBL1XR1.
    
 0.925
sconC
E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.
  
  
 
0.905
ago
F-box/WD repeat-containing protein 7.
    
 0.898
C02F5.7
Putative F-box/LRR-repeat-like protein.
   
 0.896
BTRC
F-box/WD repeat-containing protein 1A.
    
 0.886
fbxo9
F-box only protein 9.
    
 0.874
ned-8
Nedd8.
   
 0.803
T01_3190
G2/mitotic-specific cyclin; Belongs to the cyclin family.
    
 0.779
UBA52-4
Ubiquitin-60S ribosomal protein L40.
    
  0.769
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.