STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc47Coiled-coil domain-containing protein 47. (889 aa)    
Predicted Functional Partners:
Tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
    
 
 0.874
ncl1
Nicalin-1.
    
 
 0.848
Sec61a2
Protein transport protein Sec61 subunit alpha isoform 2.
   
 
 0.773
SEC61B
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
   0.701
sec61g
Protein transport protein Sec61 subunit gamma.
    
   0.693
RpL5
60S ribosomal protein L5.
   
   0.669
RPL18A
60S ribosomal protein L18a.
   
   0.667
RpL38
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
 
 0.659
rpl11
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
   0.655
RPL3
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.652
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.