STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T01_12734RIIa domain-containing protein. (234 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
   
 0.745
mus81
Crossover junction endonuclease MUS81.
    
 0.701
pold2
DNA polymerase delta subunit 2.
    
 0.692
SMN1
Survival motor neuron protein.
    
 0.651
T01_13073
DNA polymerase.
   
 0.638
Snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.621
snr-4
Small nuclear ribonucleoprotein Sm D2.
    
 0.615
T01_6192
Uncharacterized protein.
   
 0.607
UBXN7
UBX domain-containing protein 7.
   
 
 0.604
SmF
Small nuclear ribonucleoprotein F.
    
  0.570
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.