STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CcnkCyclin-K; Belongs to the cyclin family. (997 aa)    
Predicted Functional Partners:
cdk12
Cyclin-dependent kinase 12.
   
 0.987
lhx1
LIM/homeobox protein Lhx1.
    
   0.876
cdk9
Cyclin-dependent kinase 9.
   
 0.851
CDK9
Cyclin-dependent kinase 9.
   
 0.851
Supt5h
Transcription elongation factor SPT5.
    
 0.843
CDK7
Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.
     
 0.814
RpII215
DNA-directed RNA polymerase II subunit RPB1.
   
 0.794
ama-1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.794
ama-1-2
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.794
CycC
Cyclin-C; Belongs to the cyclin family.
     
0.789
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.