Lrrc15-2 protein (Trichinella spiralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lrrc15-2

Leucine-rich repeat-containing protein 15. (626 aa)

Predicted Functional Partners:

LPHN3

0.725

PTK7

0.557

Cask

0.537

T01_6580

0.516

snr-4

0.505

T01_6192

0.489

Snrpd1

0.485

SmF

0.482

snr-7

0.480

RSU1

0.475

Your Current Organism:

Trichinella spiralis

NCBI taxonomy Id: 6334
Other names: T. spiralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cask	Lrrc15-2	A0A0V1C2M5	A0A0V1C0P6	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.	Leucine-rich repeat-containing protein 15.	0.537
Cask	PTK7	A0A0V1C2M5	A0A0V1AV21	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.417
Cask	RSU1	A0A0V1C2M5	A0A0V1BHL8	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.	Ras suppressor protein 1.	0.537
LPHN3	Lrrc15-2	A0A0V1BRV1	A0A0V1C0P6	Latrophilin-like protein 1; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat-containing protein 15.	0.725
LPHN3	RSU1	A0A0V1BRV1	A0A0V1BHL8	Latrophilin-like protein 1; Belongs to the G-protein coupled receptor 2 family.	Ras suppressor protein 1.	0.709
Lrrc15-2	Cask	A0A0V1C0P6	A0A0V1C2M5	Leucine-rich repeat-containing protein 15.	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.	0.537
Lrrc15-2	LPHN3	A0A0V1C0P6	A0A0V1BRV1	Leucine-rich repeat-containing protein 15.	Latrophilin-like protein 1; Belongs to the G-protein coupled receptor 2 family.	0.725
Lrrc15-2	PTK7	A0A0V1C0P6	A0A0V1AV21	Leucine-rich repeat-containing protein 15.	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.557
Lrrc15-2	RSU1	A0A0V1C0P6	A0A0V1BHL8	Leucine-rich repeat-containing protein 15.	Ras suppressor protein 1.	0.475
Lrrc15-2	SmF	A0A0V1C0P6	A0A0V1B777	Leucine-rich repeat-containing protein 15.	Small nuclear ribonucleoprotein F.	0.482
Lrrc15-2	Snrpd1	A0A0V1C0P6	A0A0V1AWU1	Leucine-rich repeat-containing protein 15.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.485
Lrrc15-2	T01_6192	A0A0V1C0P6	E5RYW1	Leucine-rich repeat-containing protein 15.	Uncharacterized protein.	0.489
Lrrc15-2	T01_6580	A0A0V1C0P6	A0A0V1C131	Leucine-rich repeat-containing protein 15.	Uncharacterized protein.	0.516
Lrrc15-2	snr-4	A0A0V1C0P6	A0A0V1B3Y1	Leucine-rich repeat-containing protein 15.	Small nuclear ribonucleoprotein Sm D2.	0.505
Lrrc15-2	snr-7	A0A0V1C0P6	E5SGY8	Leucine-rich repeat-containing protein 15.	Small nuclear ribonucleoprotein G.	0.480
PTK7	Cask	A0A0V1AV21	A0A0V1C2M5	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.	0.417
PTK7	Lrrc15-2	A0A0V1AV21	A0A0V1C0P6	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Leucine-rich repeat-containing protein 15.	0.557
PTK7	RSU1	A0A0V1AV21	A0A0V1BHL8	Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Ras suppressor protein 1.	0.534
RSU1	Cask	A0A0V1BHL8	A0A0V1C2M5	Ras suppressor protein 1.	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.	0.537
RSU1	LPHN3	A0A0V1BHL8	A0A0V1BRV1	Ras suppressor protein 1.	Latrophilin-like protein 1; Belongs to the G-protein coupled receptor 2 family.	0.709