STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klhl20Kelch-like protein 20. (605 aa)    
Predicted Functional Partners:
Cul3
Cullin-3; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
 0.867
BBS9
Protein PTHB1.
    
 0.646
BBS1
Bardet-Biedl syndrome 1 protein.
    
 0.642
BBS4
Bardet-Biedl syndrome 4 protein.
    
 0.633
Bbs7
Bardet-Biedl syndrome 7-like protein.
   
 0.614
UBXN7
UBX domain-containing protein 7.
   
  0.596
Ttc8
Tetratricopeptide repeat protein 8.
   
 0.593
ned-8
Nedd8.
    
 0.584
CAND1
Cullin-associated Nedd8-dissociated protein 1.
   
 
 0.567
DCUN1D1
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.
   
 
 0.566
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.