STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmrta2Doublesex-and mab-3-related transcription factor A2. (339 aa)    
Predicted Functional Partners:
Szt2
Protein SZT2.
    
 0.757
Nprl2
Nitrogen permease regulator 2-like protein.
    
 0.732
DEPDC5
DEP domain-containing protein 5.
   
 0.582
DEPDC5-2
DEP domain-containing protein 5.
   
 0.582
T01_5912
WD repeat-containing protein mio-A.
     
 0.574
VhaSFD
V-type proton ATPase subunit H.
    
  0.564
T01_974
V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
   
 
 0.563
neur
Protein neuralized.
      
 0.549
Sec13
Protein SEC13-like protein; Belongs to the WD repeat SEC13 family.
     
 0.541
T01_6573
Uncharacterized protein.
    
 0.491
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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