STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Polr1bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1177 aa)    
Predicted Functional Partners:
Polr1a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 0.997
polr1e
DNA-directed RNA polymerase I subunit RPA49.
   
 0.995
POLR1C
DNA-directed RNA polymerases I and III subunit RPAC1.
  
 0.992
T01_12821
Uncharacterized protein.
   
 0.992
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 0.992
D3Ertd751e
UPF0462 protein C4orf33-like protein.
   
 0.989
rpb-10
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.987
RRN3
RNA polymerase I-specific transcription initiation factor RRN3.
   
 0.985
POLR2K
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
   
 0.984
rpb-8
Putative DNA-directed RNA polymerases I, II, and III subunit RPABC3.
   
 0.983
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.