STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dcp1amRNA-decapping enzyme 1A. (354 aa)    
Predicted Functional Partners:
Dcp2
M7GpppN-mRNA hydrolase.
    
 0.987
XRN1
5'-3' exoribonuclease 1; Belongs to the universal ribosomal protein uL11 family.
    
 0.979
cgh-1
ATP-dependent RNA helicase cgh-1; Belongs to the DEAD box helicase family.
   
 0.977
T01_5961
Ge1_WD40 domain-containing protein.
    
 0.976
T01_3460
Uncharacterized protein.
    
 0.954
APOA1BP
NAD(P)H-hydrate epimerase.
   
 0.932
Apoa1bp
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
   
 0.932
LSM14A
Protein LSM14-like protein A.
    
 
 0.897
Lsm4
U6 snRNA-associated Sm-like protein LSm4.
   
 0.865
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.834
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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