STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI29171.1Polyketide cyclase / dehydrase and lipid transport. (141 aa)    
Predicted Functional Partners:
SDI29086.1
Signal transduction histidine kinase.
  
    0.606
SDI29047.1
Membrane protein DedA, SNARE-associated domain.
       0.596
SDI29123.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
       0.596
SDH83680.1
Hypothetical protein.
  
     0.492
SDK90569.1
Protein of unknown function.
  
     0.477
SDI28971.1
Uncharacterized conserved protein, contains Zn finger domain.
       0.445
SDI29010.1
Superfamily II DNA or RNA helicase, SNF2 family.
       0.445
SDH37815.1
LysR substrate binding domain-containing protein.
  
     0.423
SDM26500.1
Phosphotransferase enzyme family protein.
  
     0.406
Your Current Organism:
Nonomuraea jiangxiensis
NCBI taxonomy Id: 633440
Other names: CGMCC 4.6533, N. jiangxiensis, NBRC 106679, Nonomuraea jiangxiensis Li et al. 2012, Nonomuraea sp. FXJ1.102, strain FXJ1.102
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