Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH80359.1 | SDJ98562.1 | SAMN05421869_103291 | SAMN05421869_113188 | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | Flavoprotein. | 0.542 |
SDH80359.1 | coaD | SAMN05421869_103291 | SAMN05421869_114106 | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.694 |
SDH80359.1 | coaX | SAMN05421869_103291 | SAMN05421869_11315 | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis. | 0.615 |
SDH80359.1 | panC | SAMN05421869_103291 | SAMN05421869_11317 | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.706 |
SDI83400.1 | SDJ98562.1 | SAMN05421869_107222 | SAMN05421869_113188 | Cystathionine beta-synthase. | Flavoprotein. | 0.665 |
SDJ00972.1 | SDJ98562.1 | SAMN05421869_108161 | SAMN05421869_113188 | Nicotinamide-nucleotide adenylyltransferase, NadR type. | Flavoprotein. | 0.666 |
SDJ00972.1 | coaD | SAMN05421869_108161 | SAMN05421869_114106 | Nicotinamide-nucleotide adenylyltransferase, NadR type. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.833 |
SDJ00972.1 | coaE | SAMN05421869_108161 | SAMN05421869_104277 | Nicotinamide-nucleotide adenylyltransferase, NadR type. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.811 |
SDJ00972.1 | coaX | SAMN05421869_108161 | SAMN05421869_11315 | Nicotinamide-nucleotide adenylyltransferase, NadR type. | Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis. | 0.733 |
SDJ98562.1 | SDH80359.1 | SAMN05421869_113188 | SAMN05421869_103291 | Flavoprotein. | BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. | 0.542 |
SDJ98562.1 | SDI83400.1 | SAMN05421869_113188 | SAMN05421869_107222 | Flavoprotein. | Cystathionine beta-synthase. | 0.665 |
SDJ98562.1 | SDJ00972.1 | SAMN05421869_113188 | SAMN05421869_108161 | Flavoprotein. | Nicotinamide-nucleotide adenylyltransferase, NadR type. | 0.666 |
SDJ98562.1 | SDJ98603.1 | SAMN05421869_113188 | SAMN05421869_113189 | Flavoprotein. | Heptaprenyl diphosphate synthase/octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.539 |
SDJ98562.1 | coaD | SAMN05421869_113188 | SAMN05421869_114106 | Flavoprotein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.857 |
SDJ98562.1 | coaE | SAMN05421869_113188 | SAMN05421869_104277 | Flavoprotein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.583 |
SDJ98562.1 | coaX | SAMN05421869_113188 | SAMN05421869_11315 | Flavoprotein. | Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis. | 0.865 |
SDJ98562.1 | dut | SAMN05421869_113188 | SAMN05421869_10272 | Flavoprotein. | dUTP pyrophosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.786 |
SDJ98562.1 | panC | SAMN05421869_113188 | SAMN05421869_11317 | Flavoprotein. | Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.620 |
SDJ98562.1 | priA | SAMN05421869_113188 | SAMN05421869_104129 | Flavoprotein. | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.561 |
SDJ98603.1 | SDJ98562.1 | SAMN05421869_113189 | SAMN05421869_113188 | Heptaprenyl diphosphate synthase/octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Flavoprotein. | 0.539 |
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