STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK95324.1L-2,4-diaminobutyrate decarboxylase. (460 aa)    
Predicted Functional Partners:
SDI08822.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.911
SDL08752.1
Methylaspartate mutase epsilon subunit.
  
 
 0.870
SDL53825.1
Pimaricinolide synthase PimS1.
  
 
 0.870
SDL08583.1
Acyl transferase domain-containing protein.
  
 
 0.867
SDJ91776.1
Nicotinate-nucleotide pyrophosphorylase (carboxylating); Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
  0.786
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.781
SDI19033.1
Amino acid adenylation domain-containing protein.
    
 0.777
SDL35828.1
Nonribosomal peptide synthetase protein VioO.
    
 0.776
SDH69862.1
Acyl transferase domain-containing protein.
     
 0.706
SDL35873.1
Acyl transferase domain-containing protein.
     
 0.706
Your Current Organism:
Nonomuraea jiangxiensis
NCBI taxonomy Id: 633440
Other names: CGMCC 4.6533, N. jiangxiensis, NBRC 106679, Nonomuraea jiangxiensis Li et al. 2012, Nonomuraea sp. FXJ1.102, strain FXJ1.102
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