STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK90056.1AraC-type DNA-binding protein. (147 aa)    
Predicted Functional Partners:
SDK90016.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.953
SDL31673.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
     0.773
SDL74774.1
AraC-type DNA-binding protein.
  
   0.738
SDI08822.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.659
SDJ46000.1
AraC family transcriptional regulator, activator of mtrCDE.
  
     0.651
SDJ01637.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.556
SDI06559.1
Helix-turn-helix domain-containing protein.
  
     0.554
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.552
SDK90094.1
Membrane-associated protease RseP, regulator of RpoE activity.
       0.550
SDM21817.1
AraC family transcriptional regulator, arabinose operon regulatory protein.
  
     0.543
Your Current Organism:
Nonomuraea jiangxiensis
NCBI taxonomy Id: 633440
Other names: CGMCC 4.6533, N. jiangxiensis, NBRC 106679, Nonomuraea jiangxiensis Li et al. 2012, Nonomuraea sp. FXJ1.102, strain FXJ1.102
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