Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH45224.1 | SDI36183.1 | SAMN05421869_102306 | SAMN05421869_105222 | ATP-dependent DNA helicase DinG. | 5'-3' exonuclease. | 0.952 |
SDH45224.1 | SDK78789.1 | SAMN05421869_102306 | SAMN05421869_1191 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit beta. | 0.948 |
SDH45224.1 | SDM45818.1 | SAMN05421869_102306 | SAMN05421869_14446 | ATP-dependent DNA helicase DinG. | Superfamily II DNA or RNA helicase. | 0.982 |
SDH45224.1 | SDM84786.1 | SAMN05421869_102306 | SAMN05421869_16010 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit beta. | 0.948 |
SDH45224.1 | polA | SAMN05421869_102306 | SAMN05421869_104271 | ATP-dependent DNA helicase DinG. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.984 |
SDH45224.1 | rpoA | SAMN05421869_102306 | SAMN05421869_103559 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.984 |
SDH45224.1 | rpoB | SAMN05421869_102306 | SAMN05421869_103595 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.948 |
SDH45224.1 | rpoB-2 | SAMN05421869_102306 | SAMN05421869_120186 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.948 |
SDH45224.1 | rpoZ | SAMN05421869_102306 | SAMN05421869_104125 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.983 |
SDI36183.1 | SDH45224.1 | SAMN05421869_105222 | SAMN05421869_102306 | 5'-3' exonuclease. | ATP-dependent DNA helicase DinG. | 0.952 |
SDI36183.1 | SDJ39346.1 | SAMN05421869_105222 | SAMN05421869_110145 | 5'-3' exonuclease. | Hypothetical protein. | 0.952 |
SDI36183.1 | SDM45818.1 | SAMN05421869_105222 | SAMN05421869_14446 | 5'-3' exonuclease. | Superfamily II DNA or RNA helicase. | 0.964 |
SDI36183.1 | polA | SAMN05421869_105222 | SAMN05421869_104271 | 5'-3' exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.881 |
SDI36183.1 | rpoA | SAMN05421869_105222 | SAMN05421869_103559 | 5'-3' exonuclease. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.423 |
SDJ39346.1 | SDI36183.1 | SAMN05421869_110145 | SAMN05421869_105222 | Hypothetical protein. | 5'-3' exonuclease. | 0.952 |
SDJ39346.1 | SDK78789.1 | SAMN05421869_110145 | SAMN05421869_1191 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta. | 0.948 |
SDJ39346.1 | SDM45818.1 | SAMN05421869_110145 | SAMN05421869_14446 | Hypothetical protein. | Superfamily II DNA or RNA helicase. | 0.982 |
SDJ39346.1 | SDM84786.1 | SAMN05421869_110145 | SAMN05421869_16010 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta. | 0.948 |
SDJ39346.1 | polA | SAMN05421869_110145 | SAMN05421869_104271 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.984 |
SDJ39346.1 | rpoA | SAMN05421869_110145 | SAMN05421869_103559 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.984 |
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