STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM48863.1Uncharacterized conserved protein YndB, AHSA1/START domain. (151 aa)    
Predicted Functional Partners:
SDM48830.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.856
SDM48781.1
Alpha/beta hydrolase family protein.
       0.642
SDJ56357.1
Helix-turn-helix domain-containing protein.
 
    0.539
SDJ74530.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.523
SDM05778.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.491
SDK59481.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.463
SDM48901.1
NADPH:quinone reductase.
       0.436
SDI62075.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.431
SDL82852.1
DNA-binding transcriptional regulator, ArsR family.
 
    0.426
SDM48745.1
Hypothetical protein.
       0.421
Your Current Organism:
Nonomuraea jiangxiensis
NCBI taxonomy Id: 633440
Other names: CGMCC 4.6533, N. jiangxiensis, NBRC 106679, Nonomuraea jiangxiensis Li et al. 2012, Nonomuraea sp. FXJ1.102, strain FXJ1.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.