STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T02_5208Integrase catalytic domain-containing protein. (502 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
    
 0.700
lin-9
Protein lin-9.
    
 0.518
Dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
    
  0.512
T02_8284
Uncharacterized protein.
 
     0.484
T02_3673
Reverse transcriptase domain-containing protein.
 
     0.484
T02_11335
CCHC-type domain-containing protein.
 
     0.482
T02_3282
Reverse transcriptase domain-containing protein.
 
     0.481
T02_7518
Uncharacterized protein.
 
     0.478
lin-54
Protein lin-54.
    
 0.476
T02_7729
CCHC-type domain-containing protein.
  
     0.474
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.