STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgs1Trimethylguanosine synthase. (620 aa)    
Predicted Functional Partners:
D917_09566
Uncharacterized protein.
    
  0.961
snr-4
Small nuclear ribonucleoprotein Sm D2.
    
 0.961
T02_7802
Putative small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
  0.961
snr-7
Small nuclear ribonucleoprotein G.
    
  0.960
SNRPB
Small nuclear ribonucleoprotein-associated protein B.
    
 0.743
SNRPB-2
Small nuclear ribonucleoprotein-associated protein B.
    
 0.743
lsmd1
LSM domain-containing protein 1.
    
 0.715
pno1
RNA-binding protein PNO1.
    
 0.697
snrpd3
Small nuclear ribonucleoprotein Sm D3.
    
 0.668
snrpd3-2
Small nuclear ribonucleoprotein Sm D3.
    
 0.668
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.