STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apitd1Centromere protein S. (125 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
   
 0.999
Dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
   
 0.952
ran-4
Putative nuclear transport factor 2.
    
 0.929
RPA1
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
    
  0.880
FANCD2
Fanconi anemia group D2 protein.
     
 0.844
Dhx58
Putative ATP-dependent RNA helicase DHX58.
    
 0.841
ERCC1
DNA excision repair protein ERCC-1.
    
 0.839
T02_13577
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
 0.836
POP4
Ribonuclease P protein subunit p29.
   
 0.833
Oprk1
Kappa-type opioid receptor; Belongs to the G-protein coupled receptor 1 family.
     
 0.831
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.