STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctdspl2-2CTD small phosphatase-like protein 2. (241 aa)    
Predicted Functional Partners:
LPIN3
Phosphatidate phosphatase LPIN3.
    
 0.786
timm23
Mitochondrial import inner membrane translocase subunit Tim23.
    
 0.769
TIMM17B
Mitochondrial import inner membrane translocase subunit Tim17-B.
   
 0.755
Polr2g
DNA-directed RNA polymerase II subunit RPB7.
    
 0.754
T02_12665
Uncharacterized protein.
    
 0.740
TfIIFalpha
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.740
gtf2f1
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.740
Rpb4
DNA-directed RNA polymerase II 16 kDa polypeptide.
    
 0.729
Polr2j
DNA-directed RNA polymerase II subunit RPB11.
    
 0.714
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
    
 0.709
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.