STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrp7Ribosomal RNA-processing protein 7. (235 aa)    
Predicted Functional Partners:
CIRH1A
Cirhin.
   
 0.999
Lman2
Vesicular integral-membrane protein VIP36.
   
 0.999
T02_7274
Uncharacterized protein.
   
 0.999
wdr75
WD repeat-containing protein 75.
   
 0.999
bms1
Ribosome biogenesis protein bms1.
   
 0.999
Tbl3
Transducin beta-like protein 3.
   
 0.999
HEATR1
HEAT repeat-containing protein.
   
 0.999
Rrp9
U3 small nucleolar RNA-interacting protein 2.
   
 0.999
Utp18
U3 small nucleolar RNA-associated protein 18-like protein.
   
 0.999
fbl
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.999
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.