STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sqdRNA-binding protein squid. (799 aa)    
Predicted Functional Partners:
Msi2
RNA-binding protein Musashi-like protein Rbp6.
  
0.882
CSTF2-2
Cleavage stimulation factor subunit 2.
  
 
 0.782
CSTF2
Cleavage stimulation factor subunit 2.
  
 
 0.781
Tnpo1
Transportin-1.
    
 
 0.710
Tra2b
Transformer-2-like protein beta.
  
 
0.702
SRSF2
Serine/arginine-rich splicing factor 2.
  
 
 0.694
HNRNPF
Heterogeneous nuclear ribonucleoprotein F.
   
 0.678
CSTF2-3
Cleavage stimulation factor subunit 2.
  
 
0.649
B52
Serine-arginine protein 55.
  
 0.645
fox-1
Sex determination protein fox-1.
  
 
 
 0.639
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.