STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCH1E3 ubiquitin-protein ligase MARCH1. (463 aa)    
Predicted Functional Partners:
faf2-b
FAS-associated factor 2-B.
    
 
 0.678
syvn1-b
E3 ubiquitin-protein ligase synoviolin B.
    
 
 0.640
UBE2G2
Ubiquitin-conjugating enzyme E2 G2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.615
Ube2j2
Ubiquitin-conjugating enzyme E2 J2.
    
 
 0.608
cdc-48.2
Transitional endoplasmic reticulum ATPase-like protein 2; Belongs to the AAA ATPase family.
    
 
 0.604
SPATA5
Spermatogenesis-associated protein 5.
    
 
 0.604
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.600
CNOT2-2
CCR4-NOT transcription complex subunit 2.
    
 
 0.600
UBR1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.570
FPR2
Peptidylprolyl isomerase.
    
 
 0.534
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.