STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nfil3Nuclear factor interleukin-3-regulated protein. (415 aa)    
Predicted Functional Partners:
cco-2
Cytochrome c oxidase subunit 5A, mitochondrial.
   
 0.826
T02_12594
Period circadian-like protein 3.
   
 0.797
Cox5b
Cytochrome c oxidase subunit 5B, mitochondrial.
   
 0.786
COX5B
Cytochrome c oxidase subunit 5B, mitochondrial.
   
 0.786
COX4I1
Mitochondrial cytochrome c oxidase subunit.
   
 0.779
COX6B-2
Cytochrome c oxidase subunit 6b-2.
   
 0.774
T02_8438
BZIP domain-containing protein.
   
 0.754
UQCRB
Cytochrome b-c1 complex subunit 7.
   
 0.721
Uqcrc2
Cytochrome b-c1 complex subunit 2, mitochondrial.
   
 0.692
RUNX1
Runt-related transcription factor 1.
    
 0.686
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.