STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mcfd2Multiple coagulation factor deficiency protein 2-like protein. (138 aa)    
Predicted Functional Partners:
Lman1
Protein ERGIC-53.
   
 0.998
T02_9434
Uncharacterized protein.
     
 0.658
CTSC
Dipeptidyl peptidase 1; Belongs to the peptidase C1 family.
     
 0.641
SEC22B
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
   
 
 0.634
Coq3
Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.631
ZK180.4
GTP-binding protein SAR1; Belongs to the small GTPase superfamily. SAR1 family.
     
 0.631
Uso1
General vesicular transport factor.
   
 
 0.625
SEC23A
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 
 0.625
SEC24C
Protein transport protein Sec24C.
     
 0.623
Sec13
Protein SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
 0.615
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.