Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ier3ip1Immediate early response 3-interacting protein 1. (97 aa)    
Predicted Functional Partners:
YIPF5
Protein YIPF.
   
 
 0.862
Tmem167b
Protein kish-B.
   
 
 0.732
rnp-1
RNA-binding protein rnp-1.
      
 0.674
yif1b-a
Protein YIF1B-A.
    
 
 0.672
Tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
   
  
 0.670
SRRM1
Serine/arginine repetitive matrix protein 1.
      
 0.661
SLC25A40
Solute carrier family 25 member 40; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.645
PCLO
Uncharacterized protein.
    
 
 0.630
yipf6
Tetraspanin.
      
 0.624
Slc35b1
Solute carrier family 35 member B1.
      
 0.528
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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