Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trpgammaTransient receptor potential-gamma protein; Belongs to the transient receptor (TC 1.A.4) family. (1027 aa)    
Predicted Functional Partners:
pkc-2
Protein kinase C.
   
 0.946
Mpdz
InaD-like protein.
   
 0.937
egl-4
cGMP-dependent protein kinase egl-4.
    
 0.837
Cacna1h
Voltage-dependent T-type calcium channel subunit alpha-1H.
     
 0.822
HR3
Putative nuclear hormone receptor HR3.
     
 0.817
Trpm7
Transient receptor potential cation channel trpm; Belongs to the transient receptor (TC 1.A.4) family.
    
 0.792
stim-1
Stromal interaction molecule-like protein.
    
 0.632
Mad
Mothers against decapentaplegic homolog.
    
 0.629
Smad4
Mothers against decapentaplegic homolog.
    
 0.629
SMAD3
Mothers against decapentaplegic homolog.
    
 0.629
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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