STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAPPC5Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (188 aa)    
Predicted Functional Partners:
TRAPPC8
Trafficking protein particle complex subunit 8.
    
 0.999
Trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.999
TRAPPC4
Trafficking protein particle complex subunit 4.
   
 0.999
trappc11
Trafficking protein particle complex subunit 11.
    
 0.999
T02_13288
Putative trafficking protein particle complex subunit 13-like protein.
    
 0.994
RAB1A
Ras-related protein Rab-1A.
    
 0.986
T02_2575
Ras-related protein Rab-33.
    
 0.883
RAB43
Ras-related protein Rab-43.
    
 0.883
SEC23A
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
     
 0.759
SEC22B
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
     
 0.738
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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