STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPSB4SPRY domain-containing SOCS box protein 4. (324 aa)    
Predicted Functional Partners:
Tceb1
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.956
Tceb1-2
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.956
Cul1
Cullin-1; Belongs to the cullin family.
   
 0.744
rpm-1
E3 ubiquitin-protein ligase rpm-1.
    
 
 0.729
Cul3
Cullin-3; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
 0.702
Skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.697
sconC
E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.
    
 0.697
rbx1
RING-box protein 1.
    
 0.654
SOCS5
Suppressor of cytokine signaling 5.
     
 0.639
Uba3
Tyrosine--tRNA ligase.
     
 0.635
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.